Using western blot and quantitative real-time polymerase chain reaction (qRT-PCR) analysis, the expression of these biomarkers was validated in Sirt6−/− mouse hepatocytes and human hepatoma cell lines. Further, re-expression of

find more SIRT6 in HepG2 cells restored sensitivity to apoptotic stimuli. Global transcriptomic analyses confirmed the prominent role of Sirt6 signaling in the regulation of key hepatocyte functions such as cell cycle, metabolism, and oxidative stress response. On the molecular level, genetic loss of Sirt6 caused changes in the methylation pattern of affected livers leading to a metabolic and pro-oncogenic phenotype. Together, our results indicate a clinical significance of SIRT6 and disrupted SIRT6 signaling during liver carcinogenesis. Mice of the strain 129-Sirt6tm1Fwa/J

were obtained from The Jackson Laboratory and interbred to obtain mice homozygous for the Sirt6tm1Fwa allele. Hepatocytes from Sirt6−/− and Sirt6+/+ mice were isolated from mouse livers via hepatic portal vein perfusion as described.[19] Mice were kept EPZ-6438 molecular weight in the central laboratory animal facility (ZVTE) of the Johannes Gutenberg University. Blood glucose levels were measured in whole blood with an Accu-Chek Sensor (Roche). For genomic DNA preparation, tissues were lysed at 37°C overnight in a buffer containing 75mM NaCl, 30 mM EDTA, 0.5% SDS and 250 μg/mL proteinase K (pH 8.0). After addition of NaCl to a final concentration of 2M, the lysate was centrifuged for 20 minutes at 10,000 rpm. Genomic DNA was precipitated, very washed with 70% ethanol, air-dried, and resuspended in TE buffer. The global DNA methylation status of livers from Sirt6−/− and Sirt6+/+ mice was determined using the colorimetric MethylFlash Methylated DNA Quantification

Kit (Epigentek Inc.) according to the manufacturer’s instructions.[20] Relative quantification of 100 ng genomic DNA was performed on an enzyme-linked immunosorbent assay plate reader at 450 nm. All investigations were performed in triplicate using two independent replicates. Total RNA from isolated hepatocytes was extracted using Absolutely RNA Miniprep Kit (Agilent Technologies) following the instructions of the manufacturer. RNA quantity was estimated using a NanoDrop ND-1000 Spectrophotometer (NanoDrop Technologies, Wilmington, DE). Gene expression microarrays were performed using Affymetrix GeneChip Mouse Genome 430 2.0 arrays. The arrays were deposited at EMBL-EBI (accession number: E-MTAB-1477). Arrays were normalized based on mean intensity values across the chips. Changes in expression levels were calculated based on log2 ratio. Publically available microarray data (Gene Expression Omnibus accession number: GSE21965)[11] was downloaded from GEO, processed, and analyzed using BRB ArrayTools V3.3.