This ability, currently highly under-used, can yield important information concerning the function of specific amino acids in ligand (substrate, metal activator, heterotropic modulator etc.) binding and in the catalytic processes. Enzyme dynamics during catalysis can be measured by NMR spectroscopy, due to enzyme catalysis occurring in the range of microseconds

to milliseconds. The dynamic processes of the enzymes during the catalytic cycle are just beginning to be known, although the chemical events and static structural features of enzyme catalysis have been well characterized. Selleckchem GSK3235025 NMR methods applied to study the dynamics of catalytic processes, such as, line-shape analysis, Carr–Purcell–Meiboom–Gill (CPMG), rotating frame spin-lattice relaxation (R1) and experiments on enzyme catalysis, occur in the microsecond to millisecond time regime. While the chemical events and static structural features of enzyme catalysis have been extensively

this website studied, little is known about dynamic processes of the enzyme during the catalytic cycle. These dynamic NMR methods together with ZZ-exchange experiments are capable of detecting conformational rearrangements with interconversion rates from 0.1 to 105 s−1. This issue will be discussed in more detail in the enzyme dynamics section. NMR yields three general parameters that are useful in obtaining information regarding the structure and dynamics of the system under investigation. The chemical shift (δ), defined as of a resonance that is observed, is a function of the magnetic environment of the nuclei being investigated. This property makes NMR spectroscopy a potent tool in the study of enzymes and their structure. The phenomenon of a chemical shift arises

from shielding of the nuclei under examination from the applied magnetic field by the electrons. Thus it is the electronic environment that causes variations in chemical shift. Any factor that will alter the electron density at the nucleus will alter the chemical shift. Shielding of methyl protons is greater than that of methylene protons, Cyclin-dependent kinase 3 and still greater than that of aromatic protons, for example. Thus the resonance of a methylene proton is further upfield than that of protons on an aromatic system, and methyl proton is furthest upfield. If spectra are obtained on samples that are fully relaxed and additional effects such as Overhauser effects do not occur, the area under the peak for each resonance is directly proportional to the concentration of nuclei. Both the relative and, in some cases, absolute distribution of magnetically non-equivalent nuclei and contaminant levels can be quantified. The second parameter is the spin–spin coupling or scalar coupling constant, Jij, that occurs between two nuclei of spin I, Ii and Ij.