The signal assignment experiments overcome developed problems of poor dispersion and extensive signal overlap by utilizing non-uniform sampling of indirectly detected dimensions in combination with Sparse Multidimensional

Fourier Transform (SMFT) processing. This enables the acquisition of high-resolution and high-dimensional spectra [2], [7], [8] and [9]. The particular advantage of these techniques is the fact that it is possible to calculate the Fourier integral for arbitrarily chosen frequency coordinates and thereby focusing only on those parts of the spectrum that contain actual peak information. The relevant regions can easily be identified based on some a priori knowledge of peak locations known from lower dimensionality spectra (2D, 3D) acquired before. Thus, frequency AZD6244 ic50 coordinates in these dimensions can be set to the exact peak frequencies extracted before and only low-dimensional cross-sections of the high-dimensional spectrum are calculated. Representative strip plots illustrating experimentally observed connectivities used for sequential signal assignment in IDPs are shown in Fig. 2. Since NMR spectroscopy of IDPs (due to their

favorable relaxation properties) is typically not limited by sensitivity Selleckchem CT99021 but rather spectral resolution, relaxation-optimized detection schemes lead to further improvements. Recently, for example, a 3D BEST–TROSY-HNCO experiment has been described following this approach [10]. Additionally, given the fact that proline residues are highly abundant in IDPs, BT-optimized Pro-edited 2D 1H–15N experiments have been developed, that either detect 1H–15N correlations of residues

following a proline (Pro-HNcocan) or preceding a proline (Pro-iHNcan) [10]. Given the availability of this powerful and robust NMR methodology spectral assignment of complex IDPs has been almost become a routine task and it can thus be anticipated that even larger and more complex IDPs will be amenable to this suite of NMR experiments. Chemical shifts are known to be exquisite reporters of backbone conformation Tacrolimus (FK506) and therefore considerable efforts have been made to exploit this information to probe local structural propensities of IDPs (reviewed in [11]). In these applications deviations from random coil values are used to describe local geometries in IDPs and quantify local secondary structure elements (secondary structure propensities) have been proposed to describe local geometries in IDPs [12], [13] and [14]. More sophisticated analysis scheme of NMR chemical shift data employ ensemble approaches developed by the groups of Forman-Kay [15], Stultz [16] and [17] and Blackledge [18].