Low concentrations of GdnHCl or urea have been suggested www.selleckchem.com/products/bmn-673.html to contribute to refolding of proteins by slowing down the refolding kinetics and as a consequence, shifting the competition between renaturation and aggregation toward the renaturation reaction (Fahnert et al., 2004; Lilie et al., 1998). Additionally, the presence of l-arginine also contributed to efficient renaturation of PnTx3-4. Although the mechanism by which l-arginine facilitates renaturation is still not completely understood, it has been hypothesized that increased solubilization of folding intermediates might be involved (Lilie et al., 1998). It is important to note that, although biological assays indirectly suggest

that recombinant PnTx3-4 and the native PnTx3-4 share similar properties, we cannot rule out the possibility that minor structural differences might exist. Future studies including investigating whether recombinant peptides co-migrate with the native toxin on HPLC and comparative mass spectroscopy analysis will be necessary to clarify Trichostatin A datasheet this issue. Analysis of the peptide

masses of different spider venoms revealed a bimodal molecular weight distribution, with 60–70% of the peptides showing 30–50 amino-acids, and a secondary grouping (less than 10%) showing peptides 60–80 amino acids long (Escoubas, 2006). Structural data, although limited, come mainly from the more abundant short peptides. These studies indicate that short spider peptides show mainly two different structural motifs characterized by different cysteine arrangements and structural features. The most common motif is the “inhibitor cystine knot” (ICK), also named knottin, with a consensus sequence of C1X3–7–C2X3–8–C3X0–7–C4X1–4–C5X4–13–C6, where C represents cysteine residues and X is any amino acid residue. Disulfide bond pairing observed in all molecules of this type follow the arrangement: C1–C4, oxyclozanide C2–C5, C3–C6. Spatial structure of peptides

with ICK motif is characterized by the presence of a β-hairpin and a peculiar “knot” (origin of its name) (Escoubas, 2006; Vassilevski et al., 2009). The other less prominent structural scaffold for short spider toxins is the DDH (disulfide-directed beta-hairpin) motif, with a consensus sequence C1 X5–19 C2 X2 (G/P) X2 C3 X6–19 C4, and arrangement of disulfide bonds C1–C3, C2–C5 (Vassilevski et al., 2009; Escoubas, 2006). It has been proposed that the DDH motif came earlier in evolution and the ICK scaffold should be considered to be a molecular evolution of the DDH motif (Shu et al., 2002; Wen et al., 2005). Very few of the longer polypeptides present in spider venoms have been isolated and sequenced to date. In addition, the three-dimensional structure of the few long spider peptides that have been described in the literature remains undetermined (Vassilevski et al., 2009). PnTx3-4 and the closely related peptide ω-Aga-IIIA belong to this class of peptides (Fig. 1) (Goncaves et al., 2011; de Castro Junior et al.