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Authors’ contributions WDJ performed many of the swarming assays and the biofilm nutrient dependence studies. MJP performed the swarming assays to examine carbon source dependence. GAG performed the assays to examine swarming on various nitrogen sources. PMO performed the static and continuous biofilm chamber experiments, as well as many swarming assays. PMO wrote the manuscript, with contributions from the three other authors. All authors have read and approved the final manuscript.”
“Background The biosynthesis pathways of the branched-chain

amino acids (valine, isoleucine and leucine) GDC-0068 price all begin with the same precursors (pyruvate or pyruvate and 2-ketobutyrate) and are catalyzed by acetohydroxy acid synthase (AHAS; EC 4.1.3.8). The pathways that lead to valine and isoleucine production have four common enzymatic steps. Leucine biosynthesis via the isopropylmalate (IPM) pathway branches from the valine biosynthesis pathway with the conversion of 2-ketoisovalerate and acetyl CoA to α-isopropylmalate. This first committed step of leucine biosynthesis is catalyzed by α-isopropylmalate synthase (α-IPMS; EC 4.1.3.12). The subsequent two steps are catalyzed by isopropylmalate dehydratase and isopropylmalate dehydrogenase. The final step in the production of leucine is catalyzed Nintedanib (BIBF 1120) by an amino transferase enzyme. The IPM pathway may be the primary metabolic route for producing leucine in bacteria, as enzymes in this pathway have been identified in diverse groups of bacteria [1]. The key enzyme of this pathway, α-IPMS, has been isolated and characterized in bacteria [2–4], fungi [5, 6] and plants [7, 8]. A comparison of α-IPMS from different species shows that there are significant sequence similarities, suggesting that this enzyme is

highly conserved [9]. The Mycobacterium tuberculosis genome contains several types of repetitive DNA sequences, including an insertion sequence (IS6110), Variable Number of Tandem Repeats (VNTR) [10–13], mycobacterial interspersed repetitive units (MIRU) [12], polymorphic GC-rich repetitive sequences (PGRS) and direct repeats (DR) [14]. Although the polymorphisms of these repetitive sequences have been studied extensively, most of these studies were focused on strain discrimination and epidemiological studies of M. tuberculosis. At present, the role of VNTR in M. tuberculosis is not well understood. A VNTR locus, designated VNTR4155, has been found within the coding region of the leuA gene. The locus contains repeat units of 57 bp and an extra 9 bp and is polymorphic in various clinical isolates.